Output analysis and diagnostics for MCMC


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acf autocorrelation function for time series
as.mcmc Markov Chain Monte Carlo Objects
as.mcmc.list Replicated Markov Chain Monte Carlo Objects
as.ts.mcmc Coerce mcmc object to time series
autocorr Autocorrelation function for Markov chains
autocorr.plot Plot autocorrelations for Markov Chains
codamenu Main menu driver for the coda package
crosscorr Cross correlations for MCMC output
crosscorr.plot Plot image of correlation matrix
densplot Probability density function estimate from MCMC output
gelman.diag Gelman and Rubin's diagnostic
gelman.plot Gelman-Rubin-Brooks plot
geweke.diag Geweke's convergence diagnostic for Markov chains
geweke.plot Geweke-Brooks plot
heidel.diag Heidelberger and Welch's convergence diagnostic
is.mcmc Markov Chain Monte Carlo Objects
is.mcmc.list Replicated Markov Chain Monte Carlo Objects
mcmc Markov Chain Monte Carlo Objects
mcmc.list Replicated Markov Chain Monte Carlo Objects
multi.menu Choose multiple options from a menu
plot.mcmc Summary plots of mcmc objects
raftery.diag Raftery Lewis diagnostic: Calculate the number of iterations required for an MCMC run
read.and.check Read data interactively and check that it satisfies conditions
read.bugs Read BUGS output files
read.bugs.interactive Read BUGS output files interactively
spec.pgram Estimate spectral density from smoothed periodogram
summary.mcmc Summary statistics for Markov Chain Monte Carlo chains
summary.mcmc.list Summary statistics for Markov Chain Monte Carlo chains
thin Thinning interval
traceplot Trace plot of MCMC output
upgrade.mcmc Upgrade mcmc objects in obsolete format
window.mcmc Time windows for mcmc objects